write_gmt: Write gene set file with GMT extension from a list
In jdreyf/ezlimma: Streamlines and extends limma package
write_gmt R Documentation
Write gene set file with GMT extension from a list
Description
Write Gene Matrix Transposed (gmt) file from a list. The first column of
the GMT are gene set names, the second are descriptions, then are genes.
Usage
write_gmt(gmt.lst, file.gmt)
Arguments
gmt.lst
List of gene sets. Each element has a gene set name, description, and genes.
file.gmt
Name of the GMT file to write to. .gmt is appended.
Details
This function was adapted from gmtlist2file in the cogena package.
Value
Invisibly, gmt.lst.
jdreyf/ezlimma documentation built on April 28, 2024, 1:10 p.m.
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| write_gmt | R Documentation |
Write gene set file with GMT extension from a list
Description
Write Gene Matrix Transposed (gmt) file from a list. The first column of the GMT are gene set names, the second are descriptions, then are genes.
Usage
write_gmt(gmt.lst, file.gmt)
Arguments
gmt.lst |
List of gene sets. Each element has a gene set |
file.gmt |
Name of the GMT file to write to. |
Details
This function was adapted from gmtlist2file in the cogena package.
Value
Invisibly, gmt.lst.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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