prop_changed: Calculate proportion of changed features per pathway

In jdreyf/ezlimma: Streamlines and extends limma package

Calculate proportion of changed features per pathway

Description

Calculate proportion of features up & down at p=0.05 per pathway.

Usage

prop_changed(feat.tab, feat.lst, stat.col = 1, p.col = 2)

Arguments

feat.tab	Table of feature (e.g. gene) statistics.
feat.lst	Named list, with each element containing names or indices of rows of feat.tab.
stat.col	Column name or column index with signed statistics.
p.col	Column name or column index with p-values.

jdreyf/ezlimma documentation built on April 28, 2024, 1:10 p.m.