ezebayes: Wrapper for limma's eBayes function that also allows for...
In jdreyf/ezlimma: Streamlines and extends limma package

ezebayes

R Documentation

Wrapper for limma's eBayes function that also allows for computing OLS statistics

Description

Wrapper for limma's eBayes, which computes empirical Bayes statistics, that allows for using the rest of the limma workflow in ezlimma to compute ordinary least squares statistics.

Usage

ezebayes(fit, moderated = TRUE, trend = FALSE)

Arguments

`fit`	Object of class `MArrayLM` as produced by `lmFit` alone (without `eBayes`).
`moderated`	Logical; should `eBayes` be used? Otherwise an unmoderated version for limma to produce ordinary least squares statistics is used.
`trend`	Logical; should an intensity-trend be allowed for the prior variance? Default is that the prior variance is constant.