Files in jentom/genotypeeval
QA/QC of a gVCF or VCF file
DESCRIPTION
LICENSE
NAMESPACE
R/GoldData.R
R/GoldDataParam.R
R/PopulationSummary.R
R/VCFData.R
R/VCFQAParam.R
R/VCFQAReport.R
inst/NEWS.Rd
inst/doc/genotypeeval_vignette.html
inst/ext-data/chr22.GRCh38.vcf.gz
inst/ext-data/chr22.GRCh38.vcf.gz.tbi
inst/ext-data/example_gold_file.vcf
man/GoldData-class.Rd
man/GoldDataFromGRanges.Rd
man/GoldDataParam-class.Rd
man/GoldDataParam.Rd
man/ReadGoldData.Rd
man/ReadVCFData.Rd
man/ReadVCFDataChunk.Rd
man/VCFData-class.Rd
man/VCFEvaluate.Rd
man/VCFQAParam-class.Rd
man/VCFQAParam.Rd
man/VCFQAReport-class.Rd
man/XHeterozygosity.Rd
man/admixture.Rd
man/callbyChrPlot.Rd
man/calltypePlot.Rd
man/chunkData.Rd
man/computeTiTv.Rd
man/didSamplePass.Rd
man/didSamplePassOverall.Rd
man/genotypeQualityPlot.Rd
man/getCoefs.Rd
man/getDescriptors.Rd
man/getName.Rd
man/getPlots.Rd
man/getResults.Rd
man/getVR.Rd
man/goldCompare.Rd
man/hetGap.Rd
man/hetsMasked.Rd
man/homrefPlot.Rd
man/meanGQ.Rd
man/myf.Rd
man/numberCalls.Rd
man/numberOfHets.Rd
man/numberOfHomRefs.Rd
man/numberOfHomVars.Rd
man/percentHets.Rd
man/percentInTarget.Rd
man/rareCompare.Rd
man/readDepth.Rd
man/readVcfGold.Rd
man/readdepthPlot.Rd
man/reformatData.Rd
man/titv.Rd
tests/testthat.R
tests/testthat/testQA.R
vignettes/genotypeeval_vignette.Rmd
vignettes/my.bib
