chunkData: chunkData is a private function to read in a chunk and...
In jentom/genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Description
chunkData is a private function to read in a chunk and process it. This is a private function and is not meant to be called by the user. An example is provided in line with bioconductor policies.
Usage
1
chunkData(myfn, genome, svp, admixture.ref)
Arguments
myfn
Filename/path of file
genome
GRCh37 or GRCh38
svp
Params specified for readVCFAsVRanges
admixture.ref
VRanges with MAF for superpopulations (EAS, AFR, EUR)
Value
VRanges of single processed chromosome
jentom/genotypeeval documentation built on May 13, 2019, 12:54 p.m.
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Description Usage Arguments Value
Description
chunkData is a private function to read in a chunk and process it. This is a private function and is not meant to be called by the user. An example is provided in line with bioconductor policies.
Usage
1 | chunkData(myfn, genome, svp, admixture.ref)
|
Arguments
myfn |
Filename/path of file |
genome |
GRCh37 or GRCh38 |
svp |
Params specified for readVCFAsVRanges |
admixture.ref |
VRanges with MAF for superpopulations (EAS, AFR, EUR) |
Value
VRanges of single processed chromosome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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