ReadGoldData: User Constructor for class
In jentom/genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Examples
Description
User Constructor for class
Usage
1
ReadGoldData(genome, vcffilename, goldparams)
Arguments
genome
Genome build, GRCh37 or GRCh38
vcffilename
path and filename of vcf file
goldparams
GoldDataParam object setting thresholds for evaluation
Value
Object of class GoldData
Examples
1
2
3
gparam <- GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)
g1000fn <- system.file("ext-data", "example_gold_file.vcf", package="genotypeeval")
g1000 <- ReadGoldData("GRCh38", g1000fn, gparam)
jentom/genotypeeval documentation built on May 13, 2019, 12:54 p.m.
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Description Usage Arguments Value Examples
Description
User Constructor for class
Usage
1 | ReadGoldData(genome, vcffilename, goldparams)
|
Arguments
genome |
Genome build, GRCh37 or GRCh38 |
vcffilename |
path and filename of vcf file |
goldparams |
GoldDataParam object setting thresholds for evaluation |
Value
Object of class GoldData
Examples
1 2 3 | gparam <- GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)
g1000fn <- system.file("ext-data", "example_gold_file.vcf", package="genotypeeval")
g1000 <- ReadGoldData("GRCh38", g1000fn, gparam)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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