percentHets: Percent of Hets as Total number of variants
In jentom/genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Description
Percent of Hets as Total number of variants
Usage
1
percentHets(x, n.hom, ll, ul)
Arguments
x
myvcf of interest
n.hom
Pass the number of homozygous reference so don't need to recalculate
ll
lower limit to pass for percent
ul
upper limit to pass for percent
Value
list with name, logical (passed or not), numeric (percent hets)
jentom/genotypeeval documentation built on May 13, 2019, 12:54 p.m.
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Description Usage Arguments Value
Description
Percent of Hets as Total number of variants
Usage
1 | percentHets(x, n.hom, ll, ul)
|
Arguments
x |
myvcf of interest |
n.hom |
Pass the number of homozygous reference so don't need to recalculate |
ll |
lower limit to pass for percent |
ul |
upper limit to pass for percent |
Value
list with name, logical (passed or not), numeric (percent hets)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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