VCFQAReport-class: Declare class VCFQAReport which will evaluate a VCF stored as...
In jentom/genotypeeval: QA/QC of a gVCF or VCF file
Description
Declare class VCFQAReport which will evaluate a VCF stored as a ReadData object.
Arguments
printnames
List of tests applied to VCF
results
Numeric vector of metrics calculated from VCF file
plots
List of plots created from VCF File
tests
TRUE (passed) or FALSE (failed) logical vector of whether VCF passed metrics using thresholds from VCFQAParam
fn
Filename of VCF evaluated (for plot titles)
jentom/genotypeeval documentation built on May 13, 2019, 12:54 p.m.
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Description
Declare class VCFQAReport which will evaluate a VCF stored as a ReadData object.
Arguments
printnames |
List of tests applied to VCF |
results |
Numeric vector of metrics calculated from VCF file |
plots |
List of plots created from VCF File |
tests |
TRUE (passed) or FALSE (failed) logical vector of whether VCF passed metrics using thresholds from VCFQAParam |
fn |
Filename of VCF evaluated (for plot titles) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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