GoldDataFromGRanges: User Constructor for class. Used to associate the gold...
In jentom/genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Examples
Description
User Constructor for class. Used to associate the gold params object with the gold granges and to check if MAF is present.
Usage
1
GoldDataFromGRanges(genome, gold.granges, goldparams)
Arguments
genome
Genome build, GRCh37 or GRCh38
gold.granges
Gold file as GRanges
goldparams
GoldDataParam object setting thresholds for evaluation
Value
Object of class GoldData
Examples
1
2
3
gparam <- GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)
gr <- GRanges(seqnames="22", IRanges(1e7,5e7))
gold <- GoldDataFromGRanges("GRCh38", gr, gparam)
jentom/genotypeeval documentation built on May 13, 2019, 12:54 p.m.
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Description Usage Arguments Value Examples
Description
User Constructor for class. Used to associate the gold params object with the gold granges and to check if MAF is present.
Usage
1 | GoldDataFromGRanges(genome, gold.granges, goldparams)
|
Arguments
genome |
Genome build, GRCh37 or GRCh38 |
gold.granges |
Gold file as GRanges |
goldparams |
GoldDataParam object setting thresholds for evaluation |
Value
Object of class GoldData
Examples
1 2 3 | gparam <- GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)
gr <- GRanges(seqnames="22", IRanges(1e7,5e7))
gold <- GoldDataFromGRanges("GRCh38", gr, gparam)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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