goldCompare: Comparator to gold standard
In jentom/genotypeeval: QA/QC of a gVCF or VCF file
Description
Usage
Arguments
Value
Description
Comparator to gold standard
Usage
1
goldCompare(x, gr, coding, limits.c, limits.uc, percent.c, name.of.gold)
Arguments
x
myvcf of interest
gr
gold GRanges
coding
Coding GRanges
limits.c
all confirmed limits
limits.uc
all unconfirmed limits
percent.c
percent confirmed limit
name.of.gold
user readable name
Value
list with name, logical vector (passed or not), numeric vector of transition transversion in coding and non coding regions in confirmed and non confirmed
jentom/genotypeeval documentation built on May 13, 2019, 12:54 p.m.
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Description Usage Arguments Value
Description
Comparator to gold standard
Usage
1 | goldCompare(x, gr, coding, limits.c, limits.uc, percent.c, name.of.gold)
|
Arguments
x |
myvcf of interest |
gr |
gold GRanges |
coding |
Coding GRanges |
limits.c |
all confirmed limits |
limits.uc |
all unconfirmed limits |
percent.c |
percent confirmed limit |
name.of.gold |
user readable name |
Value
list with name, logical vector (passed or not), numeric vector of transition transversion in coding and non coding regions in confirmed and non confirmed
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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