Files in jesse-smith/coviData

COVID-19 Data Munging Tools for the Shelby County Health Department

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/issue_template.md .github/SUPPORT.md LICENSE.md R/assert.R R/check.R R/convert_to_xlsx.R R/coviData-package.R R/data.R R/date.R R/download.R R/download_data_for_regions.R R/download_generic.R R/download_nbs_part_two.R R/download_redcap_records.R R/download_state_contacts.R R/ennotify.R R/env_vars.R R/load.R R/load_case_projects.R R/load_generic.R R/log.R R/notify.R R/path_by_date.R R/path_by_pattern.R R/plot.R R/preprocess.R R/process-helpers.R R/process.R R/randomize.R R/read.R R/replace.R R/report_date.R R/retired.R R/select.R R/sftp.R R/sftp_dir_info.R R/shelby_zip.R R/standardize.R R/std_date.R R/std_names.R R/utils-magrittr.R R/utils-tidyeval-symbols.R R/utils-tidyselect-where.R R/utils-vctrs.R R/utils.R R/vac_prep.R R/vac_prep_for_3rd_doses.R R/var_load.R R/var_prep.R R/write_file_delim.R R/write_sas.R README.md data-raw/shelby_zip.R data-raw/team_schedules.R dev/infer_report_dates.R dev/merge_report_dates.R dev/save_report_dates.R dev/script - address_clusters.R dev/script - essence_download.R man/add_axis_labels.Rd man/add_collection_date.Rd man/add_covid_events.Rd man/add_event.Rd man/add_scale_month.Rd man/add_title_caption.Rd man/add_today.Rd man/archive_report_date.Rd man/assert.Rd man/assert_bool.Rd man/assert_cols.Rd man/assert_dataframe.Rd man/check_date_updated.Rd man/check_deaths.Rd man/check_linelist_dates.Rd man/chr_to_dttm.Rd man/coalesce_across.Rd man/coalesce_by_column.Rd man/coalesce_dupes.Rd man/coalesce_report_date.Rd man/cols_exist.Rd man/convert_snapshot_to_xlsx.Rd man/convert_to_xlsx.Rd man/coviData-package.Rd man/create_path.Rd man/data-for-regions-snapshots.Rd man/date-data.Rd man/decimal_time.Rd man/distinct_inv.Rd man/download-case-projects.Rd man/download_data_for_regions.Rd man/download_integrated_data.Rd man/download_interview_report.Rd man/download_redcap_records.Rd man/download_servu.Rd man/download_state_contacts.Rd man/dttm_to_dt.Rd man/ennotify.Rd man/env_vars.Rd man/fill_dates.Rd man/find_file.Rd man/gg_var.Rd man/guess_filetype.Rd man/is_open.Rd man/is_windows.Rd man/load-case-projects.Rd man/load_data.Rd man/load_integrated_data.Rd man/load_nbs.Rd man/load_pcr.Rd man/load_report_date.Rd man/load_sas.Rd man/log_dir.Rd man/log_end.Rd man/log_start.Rd man/magrittr-helpers.Rd man/notify.Rd man/path_by_date.Rd man/path_by_pattern.Rd man/path_clean.Rd man/path_create.Rd man/path_deaths.Rd man/path_inv_id.Rd man/preprocess.Rd man/process-nbs.Rd man/randomize.Rd man/read-nbs.Rd man/read_file.Rd man/read_file_delim.Rd man/read_file_excel.Rd man/read_inv_id.Rd man/read_vac.Rd man/reduce_fst_report_dates.Rd man/reexports.Rd man/replace_deaths_id.Rd man/sample_unique.Rd man/save_plot.Rd man/save_report_date.Rd man/select_colnames.Rd man/set_axis_limits.Rd man/set_covid_theme.Rd man/sftp_changedir.Rd man/sftp_connect.Rd man/sftp_delete.Rd man/sftp_dir_info.Rd man/sftp_download.Rd man/sftp_list.Rd man/sftp_listdirs.Rd man/sftp_listfiles.Rd man/sftp_makedir.Rd man/sftp_removedir.Rd man/sftp_rename.Rd man/sftp_upload.Rd man/shelby_zip.Rd man/standardize_string.Rd man/std_dates.Rd man/std_names.Rd man/str_invert_na.Rd man/str_remove_numeric.Rd man/str_remove_ordinal.Rd man/str_remove_parenthetic.Rd man/str_remove_symbols.Rd man/str_replace_brackets.Rd man/str_to_ascii.Rd man/str_to_vb_html.Rd man/team_schedules.Rd man/to_report_date_fst.Rd man/trim_backups.Rd man/utils-tidyeval-symbols.Rd man/vac_distinct.Rd man/vac_filter_doses.Rd man/vac_filter_residents.Rd man/vac_load.Rd man/vac_mutate.Rd man/vac_parse_zip.Rd man/vac_prep.Rd man/var_load.Rd man/var_parse.Rd man/vctr-helpers.Rd man/vec_sample.Rd man/write_file_delim.Rd man/write_sas_nbs.Rd man/write_sas_neg.Rd man/write_sas_pos.Rd scripts/download_data.R scripts/updating_packages.R tests/testthat.R tests/testthat/test-standardize.R tests/testthat/test-string_replacements.R