coverage_filter: Filter the hits by the coverage
In jkruppa/virDisco: Modules for a viral detection pipeline
Description
Usage
Arguments
Details
Value
Author(s)
View source: R/coverage_filter.R
Description
Some of the hits might have a to low coverage, the function
filters the reads given the parameters by the par_list.
Usage
1
coverage_filter(hit_id, map_dna_list, par_list, out_file)
Arguments
hit_id
Genebank IDs of the hits
par_list
Parameter given by the par_list(), see
set_par_list
out_file
File path to the results dir
Details
To reduce the overall false positive hits, the function filters to
low coverage references and references with a low mapping rate.
Value
tibble
Author(s)
Jochen Kruppa
jkruppa/virDisco documentation built on May 3, 2019, 7:05 p.m.
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Description Usage Arguments Details Value Author(s)
View source: R/coverage_filter.R
Description
Some of the hits might have a to low coverage, the function filters the reads given the parameters by the par_list.
Usage
1 | coverage_filter(hit_id, map_dna_list, par_list, out_file)
|
Arguments
hit_id |
Genebank IDs of the hits |
par_list |
Parameter given by the par_list(), see
|
out_file |
File path to the results dir |
Details
To reduce the overall false positive hits, the function filters to low coverage references and references with a low mapping rate.
Value
tibble
Author(s)
Jochen Kruppa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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