run_batch_job: Function to run the pipeline on one folder
In jkruppa/virDisco: Modules for a viral detection pipeline

Description Usage Arguments Details Author(s)

Control function for the processing of many fastq samples of one folder

1	run_batch_job(batch_in_dir, batch_out_dir, par_list, run_samples = NULL)

`batch_in_dir`	Path to the folder with the fastq files
`batch_out_dir`	Path to the ouput folder
`par_list`	See `link{set_par_list}` for the possible parameters
`run_samples`	Character vector. Should special samples be run and not all? [default = NULL]

This is a main control function to get all the fastq files of one folder processed. The output is written in a other folder separated by the file names

Jochen Kruppa

jkruppa/virDisco documentation built on May 3, 2019, 7:05 p.m.