artificial_genome_mapping: Control function for the artificial mapping

In jkruppa/virDisco: Modules for a viral detection pipeline

Description

The control function of the pipeline of the artificial genome mapping.

Usage

artificial_genome_mapping(in_file, out_file, par_list)

Arguments

in_file	list of *.fastq.gz file(s) by get_sub_files
out_file	file path of the outfile
par_list	parameter list gnerated by set_par_list

Details

This function needs the fastq infiles as a named list and additonal parameters set in the par_list by the function set_par_list.

Author(s)

Jochen Kruppa

Examples

## This function needs dendencies and file handling, see \url{https://github.com/jkruppa/virDisco} for a comprehensive tutorial.

jkruppa/virDisco documentation built on May 3, 2019, 7:05 p.m.