fastq_trimmer: Internal trimmomatic call function

In jkruppa/virDisco: Modules for a viral detection pipeline

Description

Internal trimmomatic call function

Usage

fastq_trimmer(inFile, outFile, leading = 10, trailing = 10,
  minlength = 50, illuminaclip, log_file)

Arguments

inFile	Infile of the sample, see get_sub_files.
outFile	Outfile of the sample, see get_sub_files.
leading	See trimmomatic manual
trailing	See trimmomatic manual
minlength	See trimmomatic manual
illuminaclip	See trimmomatic manual
log_file	file path to log file

Details

Internal trimmomatic call function

Value

Test

Author(s)

Jochen Kruppa

jkruppa/virDisco documentation built on May 3, 2019, 7:05 p.m.