setup_aa_info_sample_sqlite: Function to build up the aa_info_sample_sqlite database
In jkruppa/virDisco: Modules for a viral detection pipeline
Description
Usage
Arguments
Details
Author(s)
Description
The function generates the SQlite databse needed for the plotting.
Usage
1
setup_aa_info_sample_sqlite(prot_id, genebank_id, prot_start, prot_end, db_file)
Arguments
prot_id
Protein ID of the amino acids
genebank_id
Genebank ID connected to the protein IDs
prot_start
Protein start position on the sequence
prot_end
Protein end position on the sequence
db_file
File path to save the sqlite3 database
Details
The function generates the SQlite databse needed for the plotting
of the hit seqeunces.
Author(s)
Jochen Kruppa
jkruppa/virDisco documentation built on May 3, 2019, 7:05 p.m.
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Description Usage Arguments Details Author(s)
Description
The function generates the SQlite databse needed for the plotting.
Usage
1 | setup_aa_info_sample_sqlite(prot_id, genebank_id, prot_start, prot_end, db_file)
|
Arguments
prot_id |
Protein ID of the amino acids |
genebank_id |
Genebank ID connected to the protein IDs |
prot_start |
Protein start position on the sequence |
prot_end |
Protein end position on the sequence |
db_file |
File path to save the sqlite3 database |
Details
The function generates the SQlite databse needed for the plotting of the hit seqeunces.
Author(s)
Jochen Kruppa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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