Description Usage Arguments Details Author(s)
A serial function to convert sam files from the mapping into bam files.
1 | sam2bam_serial(sam_files, keep = FALSE, index_sort = FALSE)
|
sam_files |
A vector of sam_files to be converted |
keep |
Should the sam files be keeped? [default = FALSE] |
index_sort |
Should the bam file sbe sorted? [default = FALSE] |
This is not a standalone function. The samtools path is needed in the program_list().
Jochen Kruppa
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