get_seq_chunks_by_threshold: Divide sequences into chunks
In jkruppa/virDisco: Modules for a viral detection pipeline
Description
Usage
Arguments
Details
Value
Author(s)
Description
The function divides a DNAStringSet into a list of smaller objects given a threshold.
Usage
1
get_seq_chunks_by_threshold(seqs, threshold)
Arguments
seqs
DNAStringSet object with sequences
threshold
maximal summed width of sequences in a chunk
Details
Sometimes programs can not handle to long sequences. The functions
allows to build up chunks without cutting sequences. If the
threshold is exceeded by adding a sequence, the exceeding sequence
will be put in the next chunk.
Value
list() of chunks with the width less the threshold
Author(s)
Jochen Kruppa
jkruppa/virDisco documentation built on May 3, 2019, 7:05 p.m.
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Description Usage Arguments Details Value Author(s)
Description
The function divides a DNAStringSet into a list of smaller objects given a threshold.
Usage
1 | get_seq_chunks_by_threshold(seqs, threshold)
|
Arguments
seqs |
DNAStringSet object with sequences |
threshold |
maximal summed width of sequences in a chunk |
Details
Sometimes programs can not handle to long sequences. The functions allows to build up chunks without cutting sequences. If the threshold is exceeded by adding a sequence, the exceeding sequence will be put in the next chunk.
Value
list() of chunks with the width less the threshold
Author(s)
Jochen Kruppa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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