get_pauda_hits: Internal parse function for PAUDA
In jkruppa/virDisco: Modules for a viral detection pipeline
Description
Usage
Arguments
Details
Value
Author(s)
View source: R/get_pauda_hits.R
Description
The function extracts the mapping information of PAUDA
Usage
1
get_pauda_hits(file, par_list)
Arguments
file
blastx input file from PAUDA output
par_list
Parameter given by the par_list(), see
set_par_list
Details
Internal function of map_pep_ref to extract the
information of the blastx output of the amino acid mapping by
PAUDA.
Value
data.frame
Author(s)
Jochen Kruppa
jkruppa/virDisco documentation built on May 3, 2019, 7:05 p.m.
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Description Usage Arguments Details Value Author(s)
View source: R/get_pauda_hits.R
Description
The function extracts the mapping information of PAUDA
Usage
1 | get_pauda_hits(file, par_list)
|
Arguments
file |
blastx input file from PAUDA output |
par_list |
Parameter given by the par_list(), see
|
Details
Internal function of map_pep_ref to extract the
information of the blastx output of the amino acid mapping by
PAUDA.
Value
data.frame
Author(s)
Jochen Kruppa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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