Man pages for jmzeng1314/IRseq
statistics and visualization for immune repertoire sequencing data
| compare_usage | compare the V/D/J/cdr3aa length distribution |
| hello | Hello, World! |
| pkgs_install | For package dependecies only |
| plot_cdr3aa_bar | distribution of V/D/J usage or clonetype according to length... |
| plot_cdr3_paired_comparison | scatterplot for the cdr3 clonetype correlation between two... |
| plot_cdr3_stat | visualization for 3 kind of statistics for CDR3 aa |
| plot_IR_basic | basic bstatistics for summary table from igblastn result |
| plot_matrix_t_test | plot the t test results of the matrix |
| plot_t_test | boxplot for t.test result of two group of data |
| plot_vdj_usage_ht | Heatmap for V/D/J usage among samples |
| plot_v_j_combination | visualization for V-J combination |
| QC_IR | basic QC for summary table from igblastn result |
| stat_cdr3aa_saturation | saturation analyses for CDR3 sequences |
| stat_cdr3_diversity | statistics for CDR3 diversity |
| stat_IR_basic | basic bstatistics for summary table from igblastn result |
