QC_IR: basic QC for summary table from igblastn result
In jmzeng1314/IRseq: statistics and visualization for immune repertoire sequencing data
Description
Usage
Arguments
Value
Examples
Description
all reads, alignment reads, reads have cdr3 aa.
Usage
1
QC_IR(IR_basic_df)
Arguments
IR_basic_df
include columns:v,d,j,cdr3nt,cdr3aa,(type,V_end,V_D_junction,D_region,D_J_junction,J_start)
Value
basic QC results: all reads, alignment reads, reads have cdr3 aa.
Examples
1
#' stat_IR_basic(IR_basic_df)
jmzeng1314/IRseq documentation built on May 8, 2019, 7:48 p.m.
R Package Documentation
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Description Usage Arguments Value Examples
Description
all reads, alignment reads, reads have cdr3 aa.
Usage
1 | QC_IR(IR_basic_df)
|
Arguments
IR_basic_df |
include columns:v,d,j,cdr3nt,cdr3aa,(type,V_end,V_D_junction,D_region,D_J_junction,J_start) |
Value
basic QC results: all reads, alignment reads, reads have cdr3 aa.
Examples
1 | #' stat_IR_basic(IR_basic_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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