stat_cdr3_diversity: statistics for CDR3 diversity
In jmzeng1314/IRseq: statistics and visualization for immune repertoire sequencing data
Description
Usage
Arguments
Value
Description
In contrast to the previously reported Shannon index and Simpson index,
the D50 value is understandable and direct.It is the calculated percentage of dominant unique clones,
accumulative reads of which made up for 50
Usage
1
stat_cdr3_diversity(cdr3aa, method = c("shannon", "simpson", "gini", "d50"))
Arguments
cdr3aa
A vector contain all of the cdr3 sequence
method
which diverity should be cal:shannon/simpson/gini/d50
Value
a numeric value
jmzeng1314/IRseq documentation built on May 8, 2019, 7:48 p.m.
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Description Usage Arguments Value
Description
In contrast to the previously reported Shannon index and Simpson index, the D50 value is understandable and direct.It is the calculated percentage of dominant unique clones, accumulative reads of which made up for 50
Usage
1 | stat_cdr3_diversity(cdr3aa, method = c("shannon", "simpson", "gini", "d50"))
|
Arguments
cdr3aa |
A vector contain all of the cdr3 sequence |
method |
which diverity should be cal:shannon/simpson/gini/d50 |
Value
a numeric value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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