plot_cdr3_stat: visualization for 3 kind of statistics for CDR3 aa
In jmzeng1314/IRseq: statistics and visualization for immune repertoire sequencing data
Description
Usage
Arguments
Examples
Description
The outermost layer will show the top 5 CDR3 aa and their frequencies
The middle layer will be the Returns Tukey's five number summary (minimum, lower-hinge, median, upper-hinge, maximum)
THe innermost layer will be the unique/double/3 plus CDR3 aa
Usage
1
plot_cdr3_stat(stat_matrix, file_out)
Arguments
stat_matrix
three columns are "type","name","value",3 rows +5 rows + 5 rows
file_out
the filename of output figue,should end up with pdf or png
Examples
1
#' plot_cdr3_stat(stat_matrix,'cdr3aa-distribution-stat.pdf')
jmzeng1314/IRseq documentation built on May 8, 2019, 7:48 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
The outermost layer will show the top 5 CDR3 aa and their frequencies The middle layer will be the Returns Tukey's five number summary (minimum, lower-hinge, median, upper-hinge, maximum) THe innermost layer will be the unique/double/3 plus CDR3 aa
Usage
1 | plot_cdr3_stat(stat_matrix, file_out)
|
Arguments
stat_matrix |
three columns are "type","name","value",3 rows +5 rows + 5 rows |
file_out |
the filename of output figue,should end up with pdf or png |
Examples
1 | #' plot_cdr3_stat(stat_matrix,'cdr3aa-distribution-stat.pdf')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.