stat_cdr3aa_saturation: saturation analyses for CDR3 sequences

Description Usage Arguments Value Examples

Description

By 1 2 3 4 5 6 7 8 9 10 20 30 40 50 60 70 80 90 percent Or user defined the percent and times, eg: 10 To counts the reads/distinct cdr3aa number/QC/diversity

Usage

1
stat_cdr3aa_saturation(IRsample, by, times)

Arguments

IRsample

cdr3aa column is needed, other(V,D,J,cdr3nt,type) are optional.

times

how many times should be sampled.

number

range from 1~99

Value

saturation_matrix 18 rows and 8 columns

Examples

1
#' plot_cdr3_stat(stat_matrix,'cdr3aa-distribution-stat.pdf')

jmzeng1314/IRseq documentation built on May 8, 2019, 7:48 p.m.