stat_IR_basic: basic bstatistics for summary table from igblastn result
In jmzeng1314/IRseq: statistics and visualization for immune repertoire sequencing data
Description
Usage
Value
Examples
Description
analysis the summary table from igblastn result, v/d/j/cdr3aa/
THe other columns are optional: type,~~~
cdr3aa_diversity=cdr3aa_diversity,
v_usage=v_usage,
d_usage=d_usage,
j_usage=j_usage,
all_cdr3aa_usage=all_cdr3aa_usage,
cdr3aa_length_usage=cdr3aa_length_usage,
top10_cdr3aa=top10_cdr3aa,
cdr3aa_length_v=cdr3aa_length_v,
cdr3aa_stat=cdr3aa_stat,
vj_usage_matrix=vj_usage_matrix,
cdr3aa_length_cdr3aa=cdr3aa_length_cdr3aa
Usage
1
stat_IR_basic(IR_basic_df)
Value
A list contain:v/d/j usage, top 10 cdr3,
Examples
1
#' stat_IR_basic(IR_basic_df)
jmzeng1314/IRseq documentation built on May 8, 2019, 7:48 p.m.
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Description Usage Value Examples
Description
analysis the summary table from igblastn result, v/d/j/cdr3aa/ THe other columns are optional: type,~~~ cdr3aa_diversity=cdr3aa_diversity, v_usage=v_usage, d_usage=d_usage, j_usage=j_usage, all_cdr3aa_usage=all_cdr3aa_usage, cdr3aa_length_usage=cdr3aa_length_usage, top10_cdr3aa=top10_cdr3aa, cdr3aa_length_v=cdr3aa_length_v, cdr3aa_stat=cdr3aa_stat, vj_usage_matrix=vj_usage_matrix, cdr3aa_length_cdr3aa=cdr3aa_length_cdr3aa
Usage
1 | stat_IR_basic(IR_basic_df)
|
Value
A list contain:v/d/j usage, top 10 cdr3,
Examples
1 | #' stat_IR_basic(IR_basic_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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