plot_cdr3_paired_comparison: scatterplot for the cdr3 clonetype correlation between two...
In jmzeng1314/IRseq: statistics and visualization for immune repertoire sequencing data
Description
Usage
Arguments
Examples
Description
draw scatter plot for the cdr3 clonetype between 2 samples, and add the linear regression formula
Usage
1
2
plot_cdr3_paired_comparison(sample1_cdr3, sample2_cdr3, sample1_id, sample2_id,
file_out)
Arguments
sample1_cdr3
two columns: cdr3aa and frequency for the first sample
sample2_cdr3
two columns: cdr3aa and frequency for the second sample
file_out
the filename of output figue,should end up with pdf or png
Examples
1
#' plot_cdr3_paired_comparison(sample1_cdr3,sample2_cdr3,'case','control','cdr3_paired_comparison.pdf')
jmzeng1314/IRseq documentation built on May 8, 2019, 7:48 p.m.
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Description Usage Arguments Examples
Description
draw scatter plot for the cdr3 clonetype between 2 samples, and add the linear regression formula
Usage
1 2 | plot_cdr3_paired_comparison(sample1_cdr3, sample2_cdr3, sample1_id, sample2_id,
file_out)
|
Arguments
sample1_cdr3 |
two columns: cdr3aa and frequency for the first sample |
sample2_cdr3 |
two columns: cdr3aa and frequency for the second sample |
file_out |
the filename of output figue,should end up with pdf or png |
Examples
1 | #' plot_cdr3_paired_comparison(sample1_cdr3,sample2_cdr3,'case','control','cdr3_paired_comparison.pdf')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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