Files in jokergoo/cotools
R functions
.Rbuildignore
.directory
.gitignore
DESCRIPTION
NAMESPACE
R/.directory
R/00_load.R
R/chromatin_states_transitions.R
R/common_utils.R
R/extract_site.R
R/gencode_utils.R
R/genomic_region_annotation.R
R/genomic_region_correlation.R
R/genomic_region_merge.R
R/genomic_region_stat.R
R/genomic_region_subgroup_specificity.R
R/methylation_cr.R
R/methylation_cr_downstream.R
R/methylation_cr_enriched.R
R/methylation_cr_gviz.R
R/methylation_cr_scatterplot.R
R/methylation_genomic_features.R
R/methylation_hooks.R
R/methylation_stat.R
R/systemdf.R
R/zzz.R
README.md
candidate/coProject.R
candidate/expression.R
candidate/global.R
candidate/mutation.R
candidate/qsub.R
candidate/utils.R
inst/perl_scripts/extract_field_from_gencode.pl
man/.directory
man/add_subtype_specificity.rd
man/annotate_to_gene_models.rd
man/annotate_to_genomic_features.rd
man/available_gencode_field.rd
man/basic_genomic_regions_stat.rd
man/bp.rd
man/chromatin_states_transition_chord_diagram.rd
man/common_regions.rd
man/compare_meth.rd
man/correlated_regions.rd
man/correlated_regions_per_gene.rd
man/cr_enriched_at_tss.rd
man/cr_gviz.rd
man/cr_hilbert.rd
man/cr_overlap_to_genomic_features.rd
man/cr_qc.rd
man/cr_scatterplot_me.rd
man/enriched_heatmap_list_on_gene.rd
man/enriched_heatmap_list_on_genomic_features.rd
man/enriched_heatmap_list_on_tss_cgi.rd
man/extract_field_from_gencode.rd
man/extract_sites.rd
man/filter_correlated_regions.rd
man/genomicCorr.absdist.rd
man/genomicCorr.jaccard.rd
man/genomicCorr.nintersect.rd
man/genomicCorr.pintersect.rd
man/genomicCorr.reldist.rd
man/genomicCorr.sintersect.rd
man/genomic_regions_correlation.rd
man/get_mean_methylation_in_genomic_features.rd
man/global_methylation_distribution.rd
man/heatmap_diff_methylation_in_genomic_features.rd
man/kb.rd
man/logical_segment.rd
man/mb.rd
man/methylation_hooks.rd
man/percentOverlaps.rd
man/plot_coverage_and_methylation_on_genome.rd
man/plot_multiple_samples_methylation_on_genome.rd
man/plot_subgroup_specificity_heatmap.rd
man/print.bp.rd
man/reduce2.rd
man/reduce_cr.rd
man/reduce_cr_gap_test.rd
man/scatterplot_with_boxplot.rd
man/subgroup_specific_genomic_regions.rd
man/systemdf.rd
man/wgbs_qcplot.rd
pipeline/.directory
pipeline/PMD_DMV_gene_expression.R
pipeline/average_CpG_coverage_per_sample__
pipeline/chromHMM_states_transitions.R
pipeline/cr.R
pipeline/cr_downstream.R
pipeline/cr_enriched.R
pipeline/cr_filter.R
pipeline/cr_gviz.R
pipeline/expr_classification.R
pipeline/expr_cr.R
pipeline/global_methylation_info.R
pipeline/global_methylation_top5k__
pipeline/head/head.R
pipeline/mean_methylation_per_gene__
pipeline/methylated_regions_stat.R
pipeline/methylation2igv___
script/load_all.R
test/.directory
test/cr.R
test/cr_filter.R
test/gviz.R
test/heatmap.R
test/pipeline.R
test/test_oncoprint.R
