genomicCorr.nintersect: Intersections between two sets of genomic regions

In jokergoo/cotools: R functions

Description

Intersections between two sets of genomic regions

Usage

genomicCorr.nintersect(query, reference, ...)

Arguments

query	genomic region 1, a GRanges object
reference	genomic region 2, a GRanges object
...	pass to countOverlaps

Details

It calculates number of regions in query that overlap with reference.

Please note this value is not equal to the number of intersections betweenn two sets of regions, because one region in query may overlap with more than one regions in reference

Be careful with the strand in your GRanges object!!

Examples

# There is no example
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jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.