annotate_to_genomic_features: simple annotation to genomic features

In jokergoo/cotools: R functions

Description

simple annotation to genomic features

Usage

annotate_to_genomic_features(gr, genomic_features,
    name = NULL, type = c("percent", "number"), prefix = "overlap_to_", ...)

Arguments

gr	a GRanges object
genomic_features	a single GRanges object or a list of GRanges objects
name	names for the genomic features if there is no name in genomic_features
type	How to calculate the values for the annotation. 'number' means numbers of genomic features that each region in gr overlap; 'percent' means the percent of each region in gr that is overlapped by genomic features
prefix	prefix for names of the annotation columns
...	pass to countOverlaps or percentOverlaps

Details

it adds new columns in gr which tell you how gr is overlaped by each of genomic_features

Note for the annotation strand information is ignored

Examples

# There is no example
NULL

jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.