genomicCorr.sintersect: Intersection between two sets of genomic regions

In jokergoo/cotools: R functions

Description

Intersection between two sets of genomic regions

Usage

genomicCorr.sintersect(query, reference, restrict = NULL)

Arguments

query	genomic region 1, a GRanges object
reference	genomic region 2, a GRanges object
restrict	subset of sites that should be only looked into, a GRanges object

Details

It calculates the total length of overlapped regions in query.

If the interest is e.g. the number of CpG sites both in query and in reference restrict can be set with a GRanges object which contains positions of CpG sites.

Be careful with the strand in your GRanges object!!

Examples

# There is no example
NULL

jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.