common_regions: Find common genomic regions across several samples

In jokergoo/cotools: R functions

Description

Find common genomic regions across several samples

Usage

common_regions(gr_list, min_width = 0, min_coverage = 1)

Arguments

gr_list	a list of GRanges, better have names
min_width	minimum width of the common regions
min_coverage	minimum cross-sample coverage for the common regions

Details

A common region is defined a region which at least i samples overlap with. The output can be sent to subgroup_specific_genomic_regions to find subgroup specific regions.

Value

a GRanges object contains coordinates of common regions. The columns in meta data are percent of the common region which is covered by regions in every sample.

Examples

# There is no example
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jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.