wgbs_qcplot: Basic qc plot for bisulfite sequencing data

In jokergoo/cotools: R functions

Description

Basic qc plot for bisulfite sequencing data

Usage

wgbs_qcplot(sample_id, chromosome = paste0("chr", 1:22))

Arguments

sample_id	a vector of sample ids
chromosome	a vector of chromosomes

Details

For each sample id, it will produce five plots:

1. mean/median CpG coverage per chromosome 2. histogram of CpG coverage 3. methylation per chromosome 4. histogram of methylation 5. mean Methylation for each CpG coverage

Examples

# There is no example
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jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.