basic_genomic_regions_stat: Basic statistics on genomic regions

In jokergoo/cotools: R functions

Description

Basic statistics on genomic regions

Usage

basic_genomic_regions_stat(gr_list, annotation = NULL, annotation_color = NULL,
    main = NULL, species = "hg19", type = c("proportion", "number", "median_width"),
    by_chr = FALSE)

Arguments

gr_list	a list of GRanges.
annotation	a vector which contains levels of samples, better have names which correspond to the names of gr_list
annotation_color	colors corresponding to levels of annotations
main	title of the plot
species	species, necessary if type equals to proportion.
type	type of statistics
by_chr	take all chromosomes as a whole or calculate statistics for every chromosome?

Details

For type settings:

proportion

proportion of total length of regions compared to the whole genome

number

number of regions

median_width

median width of regions

Value

A data frame which contains statistics for each chromosome in each sample.

Examples

# There is no example
NULL

jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.