filter_correlated_regions: filter correlation regions

Description Usage Arguments Examples

View source: R/methylation_cr.R

Description

filter correlation regions

Usage

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filter_correlated_regions(chromosome = paste0("chr", 1:22), template,
    cutoff = 0.05, adj_method = "BH", meth_diameter_cutoff = 0.25, meth_IQR_cutoff = 0.25,
    anova_cutoff = 0.05)

Arguments

chromosome

chromosomes

template

template to find cr files

cutoff

cutoff of adjusted p-values

adj_method

method for calculating adjusted p-values

meth_diameter_cutoff

cutoff for diameters

meth_IQR_cutoff

cutoff for IQR, if there is no subtype information, IQR is used to remove less variable methylation

anova_cutoff

cutoff for ANOVA test

Examples

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# There is no example
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jokergoo/cotools documentation built on May 18, 2017, 6:05 a.m.