filter_correlated_regions: filter correlation regions
In jokergoo/cotools: R functions
Description
Usage
Arguments
Examples
Description
filter correlation regions
Usage
1
2
3
filter_correlated_regions(chromosome = paste0("chr", 1:22), template,
cutoff = 0.05, adj_method = "BH", meth_diameter_cutoff = 0.25, meth_IQR_cutoff = 0.25,
anova_cutoff = 0.05)
Arguments
chromosome
chromosomes
template
template to find cr files
cutoff
cutoff of adjusted p-values
adj_method
method for calculating adjusted p-values
meth_diameter_cutoff
cutoff for diameters
meth_IQR_cutoff
cutoff for IQR, if there is no subtype information, IQR is used to remove less variable methylation
anova_cutoff
cutoff for ANOVA test
Examples
1
2
# There is no example
NULL
jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.
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Description Usage Arguments Examples
Description
filter correlation regions
Usage
1 2 3 | filter_correlated_regions(chromosome = paste0("chr", 1:22), template,
cutoff = 0.05, adj_method = "BH", meth_diameter_cutoff = 0.25, meth_IQR_cutoff = 0.25,
anova_cutoff = 0.05)
|
Arguments
chromosome |
chromosomes |
template |
template to find cr files |
cutoff |
cutoff of adjusted p-values |
adj_method |
method for calculating adjusted p-values |
meth_diameter_cutoff |
cutoff for diameters |
meth_IQR_cutoff |
cutoff for IQR, if there is no subtype information, IQR is used to remove less variable methylation |
anova_cutoff |
cutoff for ANOVA test |
Examples
1 2 | # There is no example
NULL
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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