genomicCorr.pintersect: Intersection between two sets of genomic regions

In jokergoo/cotools: R functions

Description

Intersection between two sets of genomic regions

Usage

genomicCorr.pintersect(query, reference, method = NULL, ...)

Arguments

query	genomic region 1, a GRanges object
reference	genomic region 2, a GRanges object
method	function in which the input is the percentage of each query that is overlaped in reference and output is a scalar
...	pass to percentOverlaps

Details

For each region in query, it calculates the percent that is covered by reference.

The returned value is percent which is how much query is covered by reference (by default).

Be careful with the strand in your GRanges object!!

Examples

# There is no example
NULL

jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.