correlated_regions_per_gene: correlated regions in extended gene model

In jokergoo/cotools: R functions

Description

correlated regions in extended gene model

Usage

correlated_regions_per_gene(site, meth, cov, expr, chr, cov_cutoff = 3, min_dp = 4,
    cor_method = "spearman", window_size = 5, factor = NULL, max_width = 10000)

Arguments

site	CpG sites
meth	methylation matrix corresponding to site
cov	coverage
expr	expression for current gene
chr	chromosome
cov_cutoff	cutoff for coverage
min_dp	minimal number of non-NA values for calculating correlations
cor_method	method for calcualting correlations
window_size	how many CpG sites in a window
factor	subtype
max_width	maximum width of a window

Examples

# There is no example
NULL

jokergoo/cotools documentation built on May 19, 2019, 6:24 p.m.