annotate_efo: Annotate diseases with EFO IDs
In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline
annotate_efo R Documentation
Annotate diseases with EFO IDs
Description
Attempts to annotate disease names with EFO IDs using the
'epigraphdb' package.
Note that the matching is fuzzy and some disease names will have multiple
associated EFOs which may differ in definition slightly.
Usage
annotate_efo(dat, column = "outcome")
Arguments
dat
Data.frame of data
column
Column name containing disease names
Value
Data.frame with appended column for EFO IDs
jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.
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| annotate_efo | R Documentation |
Annotate diseases with EFO IDs
Description
Attempts to annotate disease names with EFO IDs using the 'epigraphdb' package. Note that the matching is fuzzy and some disease names will have multiple associated EFOs which may differ in definition slightly.
Usage
annotate_efo(dat, column = "outcome")
Arguments
dat |
Data.frame of data |
column |
Column name containing disease names |
Value
Data.frame with appended column for EFO IDs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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