dot-ieugwasr_to_pwcoco: Prepare ieugwasr data for PWCoCo
In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline
.ieugwasr_to_pwcoco R Documentation
Prepare ieugwasr data for PWCoCo
Description
Write files for PWCoCo where data are read from the OpenGWAS DB.
Usage
.ieugwasr_to_pwcoco(id1, id2, chrompos, type1 = NULL, type2 = NULL, outfile)
Arguments
id1
ID for trait 1
id2
ID for trait 2
chrompos
Character of the format chr:pos1-pos2
type1
How to treat vcffile1 for coloc, either "quant" or "cc" (Optional)
type2
How to treat vcffile2 for coloc, either "quant" or "cc" (Optional)
outfile
Path to output files, without file ending
Value
0 if success, 1 if there was a problem
jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.
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| .ieugwasr_to_pwcoco | R Documentation |
Prepare ieugwasr data for PWCoCo
Description
Write files for PWCoCo where data are read from the OpenGWAS DB.
Usage
.ieugwasr_to_pwcoco(id1, id2, chrompos, type1 = NULL, type2 = NULL, outfile)
Arguments
id1 |
ID for trait 1 |
id2 |
ID for trait 2 |
chrompos |
Character of the format chr:pos1-pos2 |
type1 |
How to treat vcffile1 for coloc, either "quant" or "cc" (Optional) |
type2 |
How to treat vcffile2 for coloc, either "quant" or "cc" (Optional) |
outfile |
Path to output files, without file ending |
Value
0 if success, 1 if there was a problem
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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