check_snps: Check if SNPs are good for use in analyses and mark them as...

In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline

Check if SNPs are good for use in analyses and mark them as such.

Description

Check if SNPs are good for use in analyses and mark them as such.

Usage

check_snps(dat, analyses = c("mr", "coloc"), drop = T)

Arguments

dat	A data.frame of formatted data (exposure or outcome)
analyses	Which analyses should be checked?
drop	Whether to drop SNPs if they failed the check

Details

List of analyses and what data are checked for:

• "MR"beta, SE, P value

• "coloc"chromosome, position, P value

Value

Data.frame

jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.