annotate_ensg: Annotate ENSG IDs with gene names
In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline
annotate_ensg R Documentation
Annotate ENSG IDs with gene names
Description
Attempts to convert ENSG IDs to gene names (hgnc_symbol).
This is attempting using biomaRt's service and thus requires the optional
biomaRt package to be installed.
Usage
annotate_ensg(
dat,
column = "exposure",
gene_name_col = "hgnc_symbol",
build = "grch37"
)
Arguments
dat
Data.frame of data
gene_name_col
Column to append to 'dat' with converted names (Optional)
build
Genomic build (Optional)
col
Column name containing ENSG IDs (Optional)
Value
Data.frame with appended column for names
jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.
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| annotate_ensg | R Documentation |
Annotate ENSG IDs with gene names
Description
Attempts to convert ENSG IDs to gene names (hgnc_symbol). This is attempting using biomaRt's service and thus requires the optional biomaRt package to be installed.
Usage
annotate_ensg( dat, column = "exposure", gene_name_col = "hgnc_symbol", build = "grch37" )
Arguments
dat |
Data.frame of data |
gene_name_col |
Column to append to 'dat' with converted names (Optional) |
build |
Genomic build (Optional) |
col |
Column name containing ENSG IDs (Optional) |
Value
Data.frame with appended column for names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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