extract_matched_regions: Extract SNPs based on region for colocalisation analyses. Can...

In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline

Extract SNPs based on region for colocalisation analyses. Can be used before calling the 'do_coloc' function or will be called as part of that function automatically.

Description

Extract SNPs based on region for colocalisation analyses. Can be used before calling the 'do_coloc' function or will be called as part of that function automatically.

Usage

extract_matched_regions(dat, window = 5e+05, cores = 1, verbose = TRUE)

Arguments

dat	A data.frame of harmonised data
window	Window around SNPs to extract (Optional)
cores	Number of cores for multi-threaded tasks (Optional) NB: Unavailable on Windows machines
verbose	Display verbose information (Optional, boolean)

Value

Named list of matched regional data

See Also

[mrpipeline::do_coloc()]

jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.