dot-gwasvcf_to_pwcoco: Prepare gwasvcf files for PWCoCo
In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline
.gwasvcf_to_pwcoco R Documentation
Prepare gwasvcf files for PWCoCo
Description
Write files for PWCoCo where data are read from two VCF objects or files.
Usage
.gwasvcf_to_pwcoco(vcf1, vcf2, chrompos, type1 = NULL, type2 = NULL, outfile)
Arguments
vcf1
VCF object or path to VCF file
vcf2
VCF object or path to VCF file
chrompos
Character of the format chr:pos1-pos2
type1
How to treat vcffile1 for coloc, either "quant" or "cc" (Optional)
type2
How to treat vcffile2 for coloc, either "quant" or "cc" (Optional)
outfile
Path to output files, without file ending
Value
0 if success, 1 if there was a problem
jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.
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| .gwasvcf_to_pwcoco | R Documentation |
Prepare gwasvcf files for PWCoCo
Description
Write files for PWCoCo where data are read from two VCF objects or files.
Usage
.gwasvcf_to_pwcoco(vcf1, vcf2, chrompos, type1 = NULL, type2 = NULL, outfile)
Arguments
vcf1 |
VCF object or path to VCF file |
vcf2 |
VCF object or path to VCF file |
chrompos |
Character of the format chr:pos1-pos2 |
type1 |
How to treat vcffile1 for coloc, either "quant" or "cc" (Optional) |
type2 |
How to treat vcffile2 for coloc, either "quant" or "cc" (Optional) |
outfile |
Path to output files, without file ending |
Value
0 if success, 1 if there was a problem
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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