dot-pwcoco_sub: Sub-function to run PWCoCo

In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline

Sub-function to run PWCoCo

Description

Sub-function to run PWCoCo

Usage

.pwcoco_sub(
  bfile,
  chrpos,
  pwcoco,
  maf = 0.01,
  p1 = 1e-04,
  p2 = 1e-04,
  p12 = 1e-05,
  workdir = tempdir(),
  verbose = TRUE
)

Arguments

bfile	Path to Plink bed/bim/fam files
chrpos	Character of the format chr:pos1-pos2
pwcoco	Path to PWCoCo executible
maf	MAF cut-off (Optional)
p1	p1 for coloc (Optional)
p2	p2 for coloc (Optional)
p12	p12 for coloc (Optional)
workdir	Path to save temporary files (Optional)
verbose	Display verbose information (Optional, boolean)

Value

Results data.frame

jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.