dot-coloc_sub: Sub-function for the colocalisation analyses

In jwr-git/mrpipeline: Implements a Ready-for-Use Mendelian Randomisation Pipeline

Sub-function for the colocalisation analyses

Description

Sub-function for the colocalisation analyses

Usage

.coloc_sub(
  dat1,
  dat2,
  min_snps = 100,
  p1 = 1e-04,
  p2 = 1e-04,
  p12 = 1e-05,
  susie = FALSE,
  bfile = NULL,
  plink = NULL,
  verbose = TRUE
)

Arguments

dat1	SNPs, etc. from first dataset
dat2	SNPs, etc. from second dataset
min_snps	Number of minimum SNPs to check for analysis to continue (Optional)
p1	p1 for coloc (Optional)
p2	p2 for coloc (Optional)
p12	p12 for coloc (Optional)
susie	Run SuSiE? (Optional, boolean)
bfile	Path to Plink bed/bim/fam files (Optional; required for SuSiE)
plink	Path to Plink binary (Optional; required for SuSiE)
verbose	Display verbose information (Optional, boolean)

Value

Results data.frame

jwr-git/mrpipeline documentation built on Oct. 2, 2022, 3:41 p.m.