GSEAclus: Create clusters of terms for Enrichment Map

In kevincjnixon/BinfTools: Useful functions for standard analyses

Create clusters of terms for Enrichment Map

Description

Create clusters of terms for Enrichment Map

Usage

GSEAclus(gsFile, term, clusName, dir, retRNK = FALSE)

Arguments

gsFile	gmt file contatining gene sets used for GSEA
term	character vector of term keys to use to identify terms belonging to each cluster
clusName	character vector of same length as 'term' in the same order telling which cluster each term belongs to
dir	output directory for tsv file. Will be named "GSEA_clusters.tsv"
retRNK	Boolean. If TRUE, return the data frame containing the terms and clusters. Default is FALSE.

kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.