expCor: Expresion correlation plots of all gene expressions

In kevincjnixon/BinfTools: Useful functions for standard analyses

Expresion correlation plots of all gene expressions

Description

Expresion correlation plots of all gene expressions

Usage

expCor(
  counts,
  cond,
  title,
  method = "spearman",
  transform = "none",
  printInd = FALSE
)

Arguments

counts	data.frame object with rows=genes and columns=samples of gene expression
cond	character vector of length ncol(counts) assigning each sample to a condition
title	character indicating the title of the plot(s)
method	character indicating correlation method. Default is 'spearman'
transform	character indicating if gene expression should be transformed. Default is "none", other options are "log2" and "log10"
printInd	Boolean indicating if individual correlation plots should be printed in addition to paired plots. Default is FALSE.

Value

correlation plots

kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.