filtGO: Filter a list of GO results to remove/replace tables with no...

In kevincjnixon/BinfTools: Useful functions for standard analyses

Filter a list of GO results to remove/replace tables with no enriched terms

Description

Filter a list of GO results to remove/replace tables with no enriched terms

Usage

filtGO(
  x,
  replace = FALSE,
  sources = c("GO:BP", "GO:MF", "GO:CC", "CORUM", "REAC", "WP", "HP", "TF", "KEGG")
)

Arguments

x	list of GO results tables returned when returnRes=TRUE in GO_GEM() or clusGO()
replace	Boolean indicating if slots with no enriched GO terms should be replaced with a 'dummy table' - this is good if you want to run a GOHeat analysis. Default is FALSE.
sources	Character vector indicating which values should be placed in the 'sources' column if replace = TRUE. Defaults to c("GO:BP","GO:MF","GO:CC","CORUM","REAC","WP","HP","TF","KEGG")

Value

list of GO results tables with tables containing no enriched terms being removed or replaced.

kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.