customGMT: Make custom gene sets

In kevincjnixon/BinfTools: Useful functions for standard analyses

Make custom gene sets

Description

This function will use the gost output of GO_GEM along with a complete geneset object (downloaded from gprofiler) to extract gene sets of GO terms containing a given key.

Usage

customGMT(gost, key, gmt)

Arguments

gost	The gost output of GO_GEM (get by setting returnGost=TRUE when using GO_GEM)
key	The keyword used to identify GO terms of interest
gmt	The geneset object (read in using qusage::read.gmt())

Value

A list of gene sets in the format for use with other BinfTools functions

kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.