enPlot: Generate enrichment plot from GSEA results

In kevincjnixon/BinfTools: Useful functions for standard analyses

Generate enrichment plot from GSEA results

Description

Generate an enrichment plot for specific GSEA results

Usage

enPlot(gseaRes, rnk, gmt, title = NULL)

Arguments

gseaRes	Data frame output of GSEA function containing specific row(s) to make enrichment plots
rnk	named vector of gene rankings (names are genes with matching nomenclature of geneset file). Must be same as one used to create gseaRes input
gmt	named list of gene sets or character indicating path to gmt file used to generate gseaRes input
title	character vector of length nrow(gseaRes) with a title for each plot. Leave NULL for automated titles (parsed by '%' or ':")

Value

Enrichment plot with rank of genes on x-axis and running enrichment score on y-axis

kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.