fromEdgeR: Convert outputs from tools other than DESeq2 for...
In kevincjnixon/BinfTools: Useful functions for standard analyses
fromEdgeR R Documentation
Convert outputs from tools other than DESeq2 for compatibility with BinfTools
Description
These functions convert results from Limma or EdgeR for compaitibility with BinfTools
Usage
fromEdgeR(topTags, geneNames = rownames(topTags$table), statCol = NULL)
Arguments
topTags
A TopTags object originating from the output of edgeR::topTags()
geneNames
A character vector specifying the names of the genes. Defaults to rownames(topTable) or rownames(topTags$table).
statCol
A character indicating the column name of topTags$table that contains the calculated stats (e.g. 'LR', 'F', etc) - default NULL uses -log10(PValue)
Value
A data frame of results compatible with BinfTools commands
kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.
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| fromEdgeR | R Documentation |
Convert outputs from tools other than DESeq2 for compatibility with BinfTools
Description
These functions convert results from Limma or EdgeR for compaitibility with BinfTools
Usage
fromEdgeR(topTags, geneNames = rownames(topTags$table), statCol = NULL)
Arguments
topTags |
A TopTags object originating from the output of edgeR::topTags() |
geneNames |
A character vector specifying the names of the genes. Defaults to rownames(topTable) or rownames(topTags$table). |
statCol |
A character indicating the column name of topTags$table that contains the calculated stats (e.g. 'LR', 'F', etc) - default NULL uses -log10(PValue) |
Value
A data frame of results compatible with BinfTools commands
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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